Samuel Kaski

Peer-reviewed scientific articles

Journal article-refereed, Original research

Multi-view kernel completion

Bhadra, Sahely; Kaski, Samuel; Rousu, Juho

2017 in MACHINE LEARNING (Springer Netherlands)

ISSN: 1573-0565

Knowledge elicitation via sequential probabilistic inference for high-dimensional prediction

Daee, Pedram; Peltola, Tomi; Soare, Marta; Kaski, Samuel

2017 in MACHINE LEARNING (Springer Netherlands)

ISSN: 1573-0565

Likelihood-free inference via classification

Gutmann, Michael U.; Dutta, Ritabrata; Kaski, Samuel; Corander, Jukka

2017 in STATISTICS AND COMPUTING (Springer Netherlands)

ISSN: 0960-3174

A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines

Gönen, Mehmet; Weir, Barbara A.; Cowley, Glenn S.; Vazquez, Francisca; Guan, Yuanfang; Jaiswal, Alok; Karasuyama, Masayuki; Uzunangelov, Vladislav; Wang, Tao; Tsherniak, Aviad; Howell, Sara; Marbach, Daniel; Hoff, Bruce; Norman, Thea C.; Airola, Antti; Bivol, Adrian; Bunte, Kerstin; Carlin, Daniel; Chopra, Sahil; Deran, Alden; Ellrott, Kyle; Gopalacharyulu, Peddinti; Graim, Kiley; Kaski, Samuel; Khan, Suleiman A.; Newton, Yulia; Ng, Sam; Pahikkala, Tapio; Paull, Evan; Sokolov, Artem; Tang, Hao; Tang, Jing; Wennerberg, Krister; Xie, Yang; Zhan, Xiaowei; Zhu, Fan; Aittokallio, Tero; Mamitsuka, Hiroshi; Stuart, Joshua M.; Boehm, Jesse S.; Root, David E.; Xiao, Guanghua; Stolovitzky, Gustavo; Hahn, William C.; Margolin, Adam A.

2017 in Cell Systems (Cell Press)

ISSN: 2405-4712

MediSyn Uncertainty-aware Visualization of Multiple Biomedical Datasets to Support Drug Treatment Selection

He, Chen; Micallef, Luana; Tanoli, Zia-Ur-Rehman; Kaski, Samuel; Aittokallio, Tero; Jacucci, Giulio

2017 in BMC BIOINFORMATICS (BioMed Central)

ISSN: 1471-2105

A transcriptomics data-driven gene space accurately predicts liver cytopathology and drug-induced liver injury

Kohonen, Pekka; Parkkinen, Juuso A.; Willighagen, Egon L.; Ceder, Rebecca; Wennerberg, Krister; Kaski, Samuel; Grafström, Roland C.

2017 in NATURE COMMUNICATIONS (NATURE PUBLISHING GROUP)

ISSN: 2041-1723

GFA Exploratory Analysis of Multiple Data Sources with Group Factor Analysis

Leppäaho, Eemeli; Ammad-ud-din, Muhammad; Kaski, Samuel

2017 in JOURNAL OF MACHINE LEARNING RESEARCH (MICROTOME PUBL)

ISSN: 1532-4435

ELFI: Engine for Likelihood-Free Inference

Lintusaari, Jarno; Vuollekoski, Henri; Kangasrääsiö, Antti; Skyten, Kusti; Järvenpää, Marko; Gutmann, Michael; Vehtari, Aki; Corander, Jukka; Kaski, Samuel

2017 in Submitted (MICROTOME PUBL)

Learning structures of Bayesian networks for variable groups

Parviainen, Pekka; Kaski, Samuel

2017 in INTERNATIONAL JOURNAL OF APPROXIMATE REASONING (Elsevier Inc.)

ISSN: 0888-613X

Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization

Ammad-ud-din, Muhammad; Khan, Suleiman A.; Malani, Disha; Murumägi, Astrid; Kallioniemi, Olli; Aittokallio, Tero; Kaski, Samuel

2016 in BIOINFORMATICS (OXFORD UNIV PRESS INC)

ISSN: 1367-4803

Extracting relevance and affect information from physiological text annotation

Barral, Oswald; Kosunen, Ilkka; Ruotsalo, Tuukka; Spapé, Michiel M.; Eugster, Manuel J A; Ravaja, Niklas; Kaski, Samuel; Jacucci, Giulio

2016 in USER MODELING AND USER-ADAPTED INTERACTION (Springer Netherlands)

ISSN: 0924-1868

Modelling-based experiment retrieval A case study with gene expression clustering

Blomstedt, Paul; Dutta, Ritabrata; Seth, Sohan; Brazma, Alvis; Kaski, Samuel

2016 in BIOINFORMATICS (OXFORD UNIV PRESS INC)

ISSN: 1367-4803

Sparse group factor analysis for biclustering of multiple data sources

Bunte, Kerstin; Leppäaho, Eemeli; Saarinen, Inka; Kaski, Samuel

2016 in BIOINFORMATICS (OXFORD UNIV PRESS INC)

ISSN: 1367-4803

A Latent Feature Model Approach to Biclustering

Caldas, José; Kaski, Samuel

2016 in International Journal of Knowledge Discovery in Bioinformatics (OXFORD UNIV PRESS INC)

ISSN: 1947-9115

Natural brain-information interfaces: Recommending information by relevance inferred from human brain signals

Eugster, Manuel; Ruotsalo, Tuukka; Spape, Michiel; Barral, Oswald; Ravaja, Niklas; Jacucci, Giulio; Kaski, Samuel

2016 in SCIENTIFIC REPORTS (NATURE PUBLISHING GROUP)

ISSN: 2045-2322

Multiple output regression with latent noise

Gillberg, Leo; Marttinen, Pekka; Pirinen, Matti; Kangas, Antti J.; Soininen, Pasi; Ali, Mehreen; Havulinna, Aki S.; Järvelin, Marjo Riitta; Ala-Korpela, Mika; Kaski, Samuel

2016 in JOURNAL OF MACHINE LEARNING RESEARCH (MICROTOME PUBL)

ISSN: 1532-4435

Bayesian multi-tensor factorization

Khan, Suleiman; Leppäaho, Eemeli; Kaski, Samuel

2016 in MACHINE LEARNING (Springer Netherlands)

ISSN: 0885-6125

On the identifiability of transmission dynamic models for infectious diseases

Lintusaari, Jarno; Gutmann, Michaelu; Kaski, Samuel; Corander, Jukka

2016 in GENETICS (GENETICS SOCIETY AMERICA)

ISSN: 0016-6731

Fundamentals and Recent Developments in Approximate Bayesian Computation

Lintusaari, Jarno; Gutmann, Michael; Dutta, Ritabrata; Kaski, Samuel; Corander, Jukka

2016 in SYSTEMATIC BIOLOGY (Oxford University Press)

ISSN: 1063-5157

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

Sieberts, Solveig K.; Zhu, Fan; García-García, Javier; Stahl, Eli; Pratap, Abhishek; Pandey, Gaurav; Pappas, Dimitrios; Aguilar, Daniel; Anton, Bernat; Bonet, Jaume; Eksi, Ridvan; Fornés, Oriol; Guney, Emre; Li, Hongdong; Marín, Manuel Alejandro; Panwar, Bharat; Planas-Iglesias, Joan; Poglayen, Daniel; Cui, Jing; Falcao, Andre O.; Suver, Christine; Hoff, Bruce; Balagurusamy, Venkat S K; Dillenberger, Donna; Neto, Elias Chaibub; Norman, Thea; Aittokallio, Tero; Ammad-Ud-Din, Muhammad; Azencott, Chloe Agathe; Bellón, Víctor; Boeva, Valentina; Bunte, Kerstin; Chheda, Himanshu; Cheng, Lu; Corander, Jukka; Dumontier, Michel; Goldenberg, Anna; Gopalacharyulu, Peddinti; Hajiloo, Mohsen; Hidru, Daniel; Jaiswal, Alok; Kaski, Samuel; Khalfaoui, Beyrem; Khan, Suleiman Ali; Kramer, Eric R.; Marttinen, Pekka; Mezlini, Aziz M.; Molparia, Bhuvan; Pirinen, Matti; Saarela, Janna; Samwald, Matthias; Stoven, Véronique; Tang, Hao; Tang, Jing; Torkamani, Ali; Vert, Jean Phillipe; Wang, Bo; Wang, Tao; Wennerberg, Krister; Wineinger, Nathan E.; Xiao, Guanghua; Xie, Yang; Yeung, Rae; Zhan, Xiaowei; Zhao, Cheng; Greenberg, Jeff; Kremer, Joel; Michaud, Kaleb; Barton, Anne; Coenen, Marieke; Mariette, Xavier; Miceli, Corinne; Shadick, Nancy; Weinblatt, Michael; De Vries, Niek; Tak, Paul P.; Gerlag, Danielle; Huizinga, Tom W J; Kurreeman, Fina; Allaart, Cornelia F.; Louis Bridges, S.; Criswell, Lindsey; Moreland, Larry; Klareskog, Lars; Saevarsdottir, Saedis; Padyukov, Leonid; Gregersen, Peter K.; Friend, Stephen; Plenge, Robert; Stolovitzky, Gustavo; Oliva, Baldo; Guan, Yuanfang; Mangravite, Lara M.

2016 in NATURE COMMUNICATIONS (NATURE PUBLISHING GROUP)

ISSN: 2041-1723

Prediction of human population responses to toxic compounds by a collaborative competition

Eduati, Federica; Mangravite, Lara M.; Wang, Tao; Tang, Hao; Bare, J. Christopher; Huang, Ruili; Norman, Thea; Kellen, Mike; Menden, Michael P.; Yang, Jichen; Zhang, Xiaowei; Zhong, Rui; Xiao, Guanghua; Xia, Menghang; Abdo, Nour; Kosyk, Oksana; Friend, Stephen; Dearry, Allen; Simeonov, Anton; Tice, Raymond R.; Rusyn, Ivan; Wright, Fred A.; Stolovitzky, Gustavo; Xie, Yang; Saez-Rodriguez, Julio; Jaiswal, Alok; Poso, Antti; Chheda, Himanshu; Kaur, Ismeet; Tang, Jing; Mpindi, John-Patrick; Wennerberg, Krister; Krasnogor, Natalio; Kaski, Samuel; Aittokallio, Tero; Hintsanen, Petteri; Khan, Suleiman Ali; ,

2015 in NATURE BIOTECHNOLOGY (NATURE PUBLISHING GROUP)

ISSN: 1087-0156

Toward the Replacement of Animal Experiments through the Bioinformatics-driven Analysis of 'Omics' Data from Human Cell Cultures

Grafström, Roland C.; Nymark, Penny; Hongisto, Vesa; Spjuth, Ola; Ceder, Rebecca; Willighagen, Egon; Hardy, Barry; Kaski, Samuel; Kohonen, Pekka

2015 in ATLA: ALTERNATIVES TO LABORATORY ANIMALS (FRAME)

ISSN: 0261-1929

Towards brain-activity-controlled information retrieval: Decoding image relevance from MEG signals

Kauppi, Jukka-Pekka; Kandemir, Melih; Saarinen, Veli-Matti; Hirvenkari, Lotta; Parkkonen, Lauri; Klami, Arto; Hari, Riitta; Kaski, Samuel

2015 in NEUROIMAGE (ACADEMIC PRESS INC ELSEVIER SCIENCE)

ISSN: 1053-8119

Group Factor Analysis

Klami, Arto; Virtanen, Seppo; Leppäaho, Eemeli; Kaski, Samuel

2015 in IEEE TRANSACTIONS ON NEURAL NETWORKS (IEEE Computational Intelligence Society)

ISSN: 1045-9227

Interactive Intent Modeling: Information Discovery Beyond Search

Ruotsalo, Tuukka; Jacucci, Giulio; Myllymaki, Petri; Kaski, Samuel

2015 in COMMUNICATIONS OF THE ACM (Association for Computing Machinery (ACM))

ISSN: 0001-0782

Integrative and personalized QSAR analysis in cancer by kernelized Bayesian matrix factorization

Ammad-ud-din, Muhammad; Georgii, Elisabeth; Gönen, Mehmet; Laitinen, Tuomo; Kallioniemi, Olli; Wennerberg, Krister; Poso, Antti; Kaski, Samuel

2014 in JOURNAL OF CHEMICAL INFORMATION AND MODELING (American Chemical Society)

ISSN: 1549-9596

A community effort to assess and improve drug sensitivity prediction algorithms

Costello, James C; Heiser, Laura M; Georgii, Elisabeth; Gönen, Mehmet; Menden, Michael P; Wang, Nicholas J; Bansal, Mukesh; Ammad-ud-din, Muhammad; Hintsanen, Petteri; Khan, Suleiman A; Mpindi, John-Patrick; Kallioniemi, Olli; Honkela, Antti; Aittokallio, Tero; Wennerberg, Krister; Community, NCI DREAM; Collins, James J; Gallahan, Dan; Singer, Dinah; Saez-Rodriguez, Julio; Kaski, Samuel; Gray, Joe W; Stolovitzky, Gustavo

2014 in NATURE BIOTECHNOLOGY (NATURE PUBLISHING GROUP)

ISSN: 1087-0156

Toward Computational Cumulative Biology by Combining Models of Biological Datasets

Faisal, Ali; Peltonen, Jaakko; Georgii, Elisabeth; Rung, Johan; Kaski, Samuel

2014 in PLOS ONE (PUBLIC LIBRARY SCIENCE)

Kernelized Bayesian Matrix Factorization

Gönen, Mehmet; Kaski, Samuel

2014 in IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (IEEE COMPUTER SOC)

ISSN: 0162-8828

Multi-task and multi-view learning of user state

Kandemir, Melih; Vetek, Akos; Gönen, Mehmet; Klami, Arto; Kaski, Samuel

2014 in NEUROCOMPUTING (Elsevier Science B.V.)

ISSN: 0925-2312

Preface

Kaski, Samuel; Corander, Jukka

2014 in JOURNAL OF MACHINE LEARNING RESEARCH (MICROTOME PUBL)

ISSN: 1532-4435

Identification of structural features in chemicals associated with cancer drug response: A systematic data-driven analysis

Khan, Suleiman A.; Virtanen, Seppo; Kallioniemi, Olli P.; Wennerberg, Krister; Poso, Antti; Kaski, Samuel

2014 in BIOINFORMATICS (OXFORD UNIV PRESS INC)

ISSN: 1367-4803

Assessing multivariate gene-metabolome associations with rare variants using Bayesian reduced rank regression

Marttinen, Pekka; Pirinen, Matti; Sarin, Antti-Pekka; Gillberg, Jussi; Kettunen, Johannes; Surakka, Ida; Kangas, Antti J; Soininen, Pasi; "O'Reilly", Paul; Kaakinen, Marika; Kähönen, Mika; Lehtimäki, Terho; Ala-Korpela, Mika; Raitakari, Olli T; Salomaa, Veikko; Järvelin, Marjo-Riitta; Ripatti, Samuli; Kaski, Samuel

2014 in BIOINFORMATICS (OXFORD UNIV PRESS INC)

ISSN: 1367-4803

Probabilistic drug connectivity mapping

Parkkinen, Juuso A.; Kaski, Samuel

2014 in BMC BIOINFORMATICS (BioMed Central)

Exploration and retrieval of whole-metagenome sequencing samples

Seth, Sohan; Välimäki, Niko; Kaski, Samuel; Honkela, Antti

2014 in BIOINFORMATICS (OXFORD UNIV PRESS INC)

ISSN: 1367-4803

Cross-organism toxicogenomics with group factor analysis

Suvitaival, Tommi; Parkkinen, Juuso; Virtanen, Seppo; Kaski, Samuel

2014 in Systems Biomedicine (OXFORD UNIV PRESS INC)

ISSN: 2162-8149

Stronger findings from mass spectral data through multi-peak modeling

Suvitaival, Tommi; Rogers, Simon; Kaski, Samuel

2014 in BMC BIOINFORMATICS (BioMed Central)

Stronger findings for metabolomics through Bayesian modeling of multiple peaks and compound correlations

Suvitaival, Tommi; Rogers, Simon; Kaski, Samuel

2014 in BIOINFORMATICS (OXFORD UNIV PRESS INC)

ISSN: 1367-4803

Bayesian Canonical Correlation Analysis

Klami, Arto; Virtanen, Seppo; Kaski, Samuel

2013 in JOURNAL OF MACHINE LEARNING RESEARCH (MICROTOME PUBL)

ISSN: 1532-4435

Identifying fragments of natural speech from the listener's MEG signals

Koskinen, Miika; Viinikanoja, Jaakko; Kurimo, Mikko; Klami, Arto; Kaski, Samuel; Hari, Riitta

2013 in HUMAN BRAIN MAPPING (Wiley-Liss Inc.)

ISSN: 1065-9471

Systematic use of computational methods allows stratification of treatment responders in glioblastoma multiforme

Louhimo, Riku; Aittomäki, Viljami; Faisal, Ali; Laakso, Marko; Chen, Ping; Ovaska, Kristian; Valo, Erkka; Lahti, Leo; Rogojin, Vladimir; Kaski, Samuel; Hautaniemi, Sampsa

2013 in Systems Biomedicine (Wiley-Liss Inc.)

ISSN: 2162-8149

Genome-wide association studies with high-dimensional phenotypes

Marttinen, P.; Gillberg, Leo; Havulinna, A.; Corander, J.; Kaski, S.

2013 in STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY (Walter de Gruyter GmbH)

ISSN: 2194-6302

Data-Driven Information Retrieval in Heterogeneous Collections of Transcriptomics Data Links SIM2s to Malignant Pleural Mesothelioma

Caldas, José; Gehlenborg, Nils; Kettunen, Eeva; Faisal, Ali; Rönty, Mikko; Nicholson, Andrew G.; Knuutila, Sakari; Brazma, Alvis; Kaski, Samuel

2012 in BIOINFORMATICS (OXFORD UNIV PRESS INC)

ISSN: 1367-4803

The rocky road to personalized medicine: computational and statistical challenges

Corander, Jukka; Aittokallio, Tero; Ripatti, Samuli; Kaski, Samuel

2012 in PERSONALIZED MEDICINE (Future Medicine Ltd.)

ISSN: 1741-0541

Targeted Retrieval of Gene Expression Measurements Using Regulatory Models

Georgii, Elisabeth; Salojärvi, Jarkko; Brosché, Mikael; Kangasjärvi, Jaakko; Kaski, Samuel

2012 in BIOINFORMATICS (OXFORD UNIV PRESS INC)

ISSN: 1367-4803

Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs

Khan, Suleiman A.; Faisal, Ali; Mpindi, John Patrick; Parkkinen, Juuso A.; Kalliokoski, Tuomo; Poso, Antti; Kallioniemi, Olli P.; Wennerberg, Krister; Kaski, Samuel

2012 in BMC BIOINFORMATICS (BioMed Central)

Focused multi-task learning in a Gaussian process framework

Leen, Gayle; Peltonen, Jaakko; Kaski, Samuel

2012 in MACHINE LEARNING (Springer Netherlands)

ISSN: 0885-6125

An Augmented Reality Interface to Contextual Information

Ajanki, Antti; Billinghurst, Mark; Gamper, Hannes; Järvenpää, Toni; Kandemir, Melih; Kaski, Samuel; Koskela, Markus; Kurimo, Mikko; Laaksonen, Jorma; Puolamäki, Kai; Ruokolainen, Teemu; Tossavainen, Timo

2011 in VIRTUAL REALITY (Springer London)

ISSN: 1359-4338

Hierarchical generative biclustering for MicroRNA Expression Analysis

Caldas, José; Kaski, Samuel

2011 in JOURNAL OF COMPUTATIONAL BIOLOGY (Mary Ann Liebert Inc.)

ISSN: 1066-5277

Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays

Lahti, Leo; Elo, Laura L.; Aittokallio, Tero; Kaski, Samuel

2011 in IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (Institute of Electrical and Electronics Engineers Inc.)

ISSN: 1545-5963

Metabolic regulation in progression to autoimmune diabetes

Sysi-Aho, Marko; Ermolov, Andrey; Gopalacharyulu, Peddinti V.; Tripathi, Abhishek; Seppänen-Laakso, Tuulikki; Maukonen, Johanna; Mattila, Ismo; Ruohonen, Suvi T.; Vähätalo, Laura; Yetukuri, Laxman; Härkönen, Taina; Lindfors, Erno; Nikkilä, Janne; Ilonen, Jorma; Simell, Olli; Saarela, Maria; Knip, Mikael; Kaski, Samuel; Savontaus, Eriika; Oresic, Matej

2011 in PLOS COMPUTATIONAL BIOLOGY (Public Library of Science)

ISSN: 1553-734X

Matching samples of multiple views

Tripathi, Abhishek; Klami, Arto; Oresic, Matej; Kaski, Samuel

2011 in DATA MINING AND KNOWLEDGE DISCOVERY (SPRINGER)

ISSN: 1384-5810

High Density Lipoprotein structural changes and drug response in lipidomic profiles following the long-term fenofibrate therapy in the FIELD substudy

Yetukuri, Laxman; Huopaniemi, Ilkka; Koivuniemi, Artturi; Maranghi, Marianna; Hiukka, Anne; Nygren, Heli; Kaski, Samuel; Taskinen, Marja-Riitta; Vattulainen, Ilpo; Jauhiainen, Matti; Oresic, Matej

2011 in PLOS ONE (PUBLIC LIBRARY SCIENCE)

Multivariate multi-way analysis of multi-source data

Huopaniemi, Ilkka; Suvitaival, Tommi; Nikkilä, Janne; Oresic, Matej; Kaski, Samuel

2010 in BIOINFORMATICS (OXFORD UNIV PRESS INC)

ISSN: 1367-4803

Global modeling of transcriptional responses in interaction networks

Lahti, Leo; Knuuttila, Juha E.A.; Kaski, Samuel

2010 in BIOINFORMATICS (OXFORD UNIV PRESS INC)

ISSN: 1367-4803

Searching for functional gene modules with interaction component models

Parkkinen, Juuso; Kaski, Samuel

2010 in BMC SYSTEMS BIOLOGY (BIOMED CENTRAL LTD)

Relevant subtask learning by constrained mixture models

Peltonen, Jaakko; Yaslan, Yusuf; Kaski, Samuel

2010 in INTELLIGENT DATA ANALYSIS (IOS Press)

ISSN: 1088-467X

Infinite factorization of multiple non-parametric views

Rogers, Simon; Klami, Arto; Sinkkonen, Janne; Girolami, Mark; Kaski, Samuel

2010 in MACHINE LEARNING (Springer Netherlands)

ISSN: 0885-6125

Information retrieval perspective to nonlinear dimensionality reduction for data visualization

Venna, Jarkko; Peltonen, Jaakko; Nybo, Kristian; Aidos, Helena; Kaski, Samuel

2010 in JOURNAL OF MACHINE LEARNING RESEARCH (MICROTOME PUBL)

ISSN: 1532-4435

Can Eyes Reveal Interest?-Implicit Queries from Gaze Patterns

Ajanki, Antti; Hardoon, David R.; Kaski, Samuel; Puolamäki, Kai; Shawe-Taylor, John

2009 in User Modeling and User-Adapted Interaction: The Journal of Personalization Research (MICROTOME PUBL)

Evolutionary Conservation of Orthoretroviral Long Terminal Repeats (LTRs) and ab initio Detection of Single LTRs in Genomic Data

Benachenhou, Farid; Jern, Patric; Oja, Merja; Sperber, Göran; Blikstad, Vidar; Somervuo, Panu; Kaski, Samuel; Blomberg, Jonas

2009 in PLOS ONE (PUBLIC LIBRARY SCIENCE)

Probabilistic retrieval and visualization of biologically relevant microarray experiments

Caldas, José; Gehlenborg, Nils; Faisal, Ali; Brazma, Alvis; Kaski, Samuel

2009 in BIOINFORMATICS (OXFORD UNIV PRESS INC)

Two-Way Analysis of High-Dimensional Collinear Data

Huopaniemi, Ilkka; Suvitaival, Tommi; Nikkilä, Janne; Oresic, Matej; Kaski, Samuel

2009 in DATA MINING AND KNOWLEDGE DISCOVERY (SPRINGER)

Visualizations for Assessing Convergence and Mixing of Markov Chain Monte Carlo Simulations

Peltonen, Jaakko; Venna, Jarkko; Kaski, Samuel

2009 in COMPUTATIONAL STATISTICS AND DATA ANALYSIS (Elsevier Science B.V.)

Latent Grouping Models for User Preference Prediction

Savia, Eerika; Puolamäki, Kai; Kaski, Samuel

2009 in MACHINE LEARNING (Springer Netherlands)

Combined use of expression and CGH arrays pinpoints novel candidate genes in Ewing sarcoma family of tumors

Savola, Suvi; Klami, Arto; Tripathi, Abhishek; Niini, Tarja; Serra, Massimo; Picci, Piero; Kaski, Samuel; Zambelli, Diana; Scotlandi, Katia; Knuutila, Sakari

2009 in BMC CANCER (Springer Netherlands)

Dependencies between stimuli and spatially independent fMRI sources: Towards brain correlates of natural stimuli

Ylipaavalniemi, Jarkko; Savia, Eerika; Malinen, Sanna; Hari, Riitta; Vigário, Ricardo; Kaski, Samuel

2009 in NEUROIMAGE (ACADEMIC PRESS INC ELSEVIER SCIENCE)

Probabilistic approach to detecting dependencies between data sets

Klami, Arto; Kaski, Samuel

2008 in NEUROCOMPUTING (Elsevier Science B.V.)

Gender dependent progression of systemic metabolic states in early childhood

Nikkilä, Janne; Sysi-Aho, Marko; Ermolov, Andrey; Seppänen-Laakso, Tuulikki; Simell, Olli; Kaski, Samuel; Oresic, Matej

2008 in MOLECULAR SYSTEMS BIOLOGY (Elsevier Science B.V.)

Simple integrative preprocessing preserves what is shared in data sources

Tripathi, Abhishek; Klami, Arto; Kaski, Samuel

2008 in BMC BIOINFORMATICS (BioMed Central)

Probabilistic modeling and machine learning in structural and systems biology

Kaski, Samuel; Rousu, Juho; Ukkonen, Esko

2007 in BMC BIOINFORMATICS (BioMed Central)

Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines

Nymark, Penny; Lindholm, Pamela M.; Korpela, Mikko V.; Lahti, Leo; Ruosaari, Salla; Kaski, Samuel; Hollmen, Jaakko; Anttila, Sisko; Kinnula, Vuokko L.; Knuutila, Sakari

2007 in BMC GENOMICS (BIOMED CENTRAL LTD)

Methods for estimating human endogenous retrovirus activities from EST databases

Oja, Merja; Peltonen, Jaakko; Blomberg, Jonas; Kaski, Samuel

2007 in BMC BIOINFORMATICS (BioMed Central)

Comparison of visualization methods for an atlas of gene expression data sets

Venna, Jarkko; Kaski, Samuel

2007 in INFORMATION VISUALIZATION (Palgrave Macmillan Ltd.)

ISSN: 1473-8716

Asbestos-associated malignancies in the lung and pleura show distinct genetic aberrations

Lindholm, P.; Nymark, P.; Wikman, H.; Salmenkivi, K.; Nicholson, A.; Korpela, M.V.; Kaski, S.; Ruosaari, S.; Hollmen, J.; Vanhala, E.; Karjalainen, A.; Anttila, S.; Kinnula, V.; Knuutila, S.

2006 in LUNG CANCER (Elsevier Ireland Ltd)

ISSN: 0169-5002

Local Multidimensional Scaling

Venna, Jarkko; Kaski, Samuel

2006 in NEURAL NETWORKS (PERGAMON-ELSEVIER SCIENCE LTD)

Associative Clustering for Exploring Dependencies between Functional Genomics Data Sets

Kaski, S.; Nikkilä, J.; Sinkkonen, J.; Lahti, L.; Knuuttila, J.; Roos, C.

2005 in IEEE/ACM Transactions on Computational Biology and Bioinformatics (PERGAMON-ELSEVIER SCIENCE LTD)

ISSN: 1326-1337

Discriminative Clustering

Kaski, S.; Sinkkonen, J.; Klami, A.

2005 in NEUROCOMPUTING (Elsevier Science B.V.)

Explorative Modeling of Yeast Stress Response and its Regulation with gCCA and Associative Clustering

Nikkilä, J.; Roos, C.; Savia, E.; Kaski, S.

2005 in INTERNATIONAL JOURNAL OF NEURAL SYSTEMS (WORLD SCIENTIFIC PUBL CO PTE LTD)

Self-Organizing Map-Based Discovery and Visualization of Human Endogeneous Retroviral Sequence Groups

Oja, M.; Sperber, G.O.; Blomberg, J.; Kaski, S.

2005 in INTERNATIONAL JOURNAL OF NEURAL SYSTEMS (WORLD SCIENTIFIC PUBL CO PTE LTD)

Discriminative Components of Data

Peltonen, J.; Kaski, S.

2005 in IEEE TRANSACTIONS ON NEURAL NETWORKS (IEEE Computational Intelligence Society)

Principle of Learning Metrics for Data Analysis

Kaski, S.; Sinkkonen, J.

2004 in Journal of VLSI Signal Processing, special issue on Machine Learning for Signal Processing (IEEE Computational Intelligence Society)

Mining Massive Document Collections by the WEBSOM Method

Lagus, K.; Kaski, S.; Kohonen, T.

2004 in INFORMATION SCIENCES (Elsevier Inc.)

Improved Learning of Riemannian Metrics for Exploratory Data Analysis

Peltonen, J.; Klami, A.; Kaski, S.

2004 in NEURAL NETWORKS (PERGAMON-ELSEVIER SCIENCE LTD)

Trustworthiness and Metrics in Visualizing Similarity of Gene Expression

Kaski, Samuel; Nikkilä, J.; Oja, M.; Venna, J.; Törrönen, P.; Castrén, E.

2003 in BMC BIOINFORMATICS (BioMed Central)

Bibliography of Self-Organizing Map SOM) Papers: 1998-2001 Addendum

Oja, Merja; Kaski, S.; Kohonen, T.

2003 in Neural Computing Surveys (BioMed Central)

Analysis and Visualization of Gene Expression Data Using Self-Organizing Maps

Nikkilä, Janne; Törönen, P.; Kaski, S.; Venna, J.; Castrén, E.; Wong, G.

2002 in NEURAL NETWORKS (PERGAMON-ELSEVIER SCIENCE LTD)

Electronic Editor: Automatic Content-based Sequential Compilation of Newspaper Articles

Ollikainen, V.; Bäckström, C.; Kaski, Samuel

2002 in NEUROCOMPUTING (Elsevier Science B.V.)

Mixture Density from Autonomous Experts

Salojärvi, Jarkko; Kaski, Samuel

2002 in International Journal of Knowledge-Based Intelligent Engineering Systems (Elsevier Science B.V.)

Clustering Based on Conditional Distributions in an Auxiliary Space

Sinkkonen, Janne; Kaski, S.

2002 in NEURAL COMPUTATION (MIT PRESS)

Bankruptcy Analysis with Self-Organizing Maps in Learning Metrics

Kaski, Samuel; Sinkkonen, J.; Peltonen, J.

2001 in IEEE TRANSACTIONS ON NEURAL NETWORKS (IEEE Computational Intelligence Society)

Coloring that Reveals Cluster Structures in Multivariate Data

Kaski, Samuel; Venna, J.; Kohonen, T.

2000 in Australian Journal of Intelligent Information Processing Systems (IEEE Computational Intelligence Society)

Self Organization of a Massive Document Collection

Kohonen, Teuvo; Kaski, S.; Lagus, K.; Salojärvi, J.; Honkela, J.; Paatero, V.; Saarela, A.

2000 in IEEE TRANSACTIONS ON NEURAL NETWORKS (IEEE Computational Intelligence Society)

WEBSOM for Textual Data Mining

Lagus, K.; Honkela, T.; Kaski, S.; Kohonen, T.

1999 in ARTIFICIAL INTELLIGENCE REVIEW (Springer Netherlands)

Bibliography of Self-Organizing Map (SOM) Papers: 1981-1997

Kaski, S.; Kangas, J.; Kohonen, T.

1998 in Neural Computing Surveys (Springer Netherlands)

WEBSOM - Self-Organizing Maps of Document Collections

Kaski, S.; Honkela, T.; Lagus, K.; Kohonen, T.

1998 in NEUROCOMPUTING (Elsevier Science B.V.)

Computationally Efficient Approximation of a Probabilistic Model for Document Representation in the WEBSOM Full-Text Analysis Method

Kaski, S.

1997 in NEURAL PROCESSING LETTERS (Springer Netherlands)

Self-Organized Formation of Various Invariant-Feature Filters in the Adaptive-Subspace SOM

Kohonen, T.; Kaski, S.; Lappalainen, H.

1997 in NEURAL COMPUTATION (MIT PRESS)

Topographic Components Model with Adaptive Latencies

Sinkkonen, J.; Kaski, S.

1997 in NEUROIMAGE (ACADEMIC PRESS INC ELSEVIER SCIENCE)

ISSN: 1053-8119

Optimal Resource Allocation for Novelty Detection in a Human Auditory Memory

Sinkkonen, J.; Kaski, S.; Huotilainen, M.; Ilmoniemi, R; Näätänen, R.; Kaila, K.

1996 in NEUROREPORT (LIPPINCOTT WILLIAMS & WILKINS)

Self-Organizing Map in Recognition of Topographic Patterns of EEG Spectra

Joutsiniemi, S.; Kaski, S.; Larsen, A.

1995 in IEEE Transactions on Biomedical Engineering (IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC)

Winner-Take-All Networks for Physiological Models of Competitive Learning

Kaski, S.; Kohonen, T.

1994 in NEURAL NETWORKS (PERGAMON-ELSEVIER SCIENCE LTD)

Review article, Literature review, Systematic review

Dimensionality Reduction for Data Visualization

Kaski, Samuel; Peltonen, Jaakko

2011 in IEEE Signal Processing Magazine (IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC)

ISSN: 1053-5888

Book section, Chapters in research books

Computational Statistics Approaches to Study Metabolic Syndrome

Huopaniemi, Ilkka; Kaski, Samuel

2014

ISBN: 978-3-319-01007-6

Joint Workshop on Personalised Information Access-PIA 2014

Steichen, Ben; Ruotsalo, Tuukka; Agosti, Maristella; Jacucci, Giulio; Lawless, Séamus; Brusilovsky, Peter; Wade, Vincent; Kaski, Samuel; Barral, Oswald

2014

ISSN: 1613-0073

Directing exploratory search with interactive intent modeling

Ruotsalo, Tuukka; Peltonen, Jaakko; Eugster, Manuel; Glowacka, Dorota; Konyushkova, Ksenia; Athukorala, Kumaripaba; Kosunen, Ilkka; Reijonen, Aki; Myllymäki, Petri; Jacucci, Giulio; Kaski, Samuel

2013

ISBN: 978-1-4503-2263-8

Three Paths to Relevance

Kaski, Samuel

2010

Can relevance of images be inferred from eye movements?

Klami, Arto; Saunders, Craig; de Campos, Teófilo; Kaski, Samuel

2008

Discriminative Clustering of Yeast Stress Response

Kaski, S.; Nikkilä, J.; Savia, E.; Roos, C.

2005

Methods for Exploratory Cluster Analysis

Kaski, Samuel; Nikkilä, J.; Kohonen, T.

2003

Exploratory Clustering of Gene Expression Profiles of Mutated Yeast Strains

Oja, Merja; Nikkilä, J.; Törönen, P.; Wong, G.; Castrén, E.; Kaski, S.

2002

Kohti uutta luovan ajattelun opettamista

Kaski, Samuel

2000

Self-Organization of a Massive Text Document Collection

Kohonen, T.; Kaski, S.; Lagus, K.; Salojärvi, J.; Honkela, J.; Paatero, V.; Saarela, A.

1999

Self-Organizing Maps of Very Large Document Collections: Justification for the WEBSOM Method

Honkela, T.; Kaski, S.; Kohonen, T.; Lagus, K.

1998

Self-Organizing Maps of Large Document Collections

Honkela, T.; Lagus, K.; Kaski, S.

1998

Tips for Processing and Color-Coding of Self-Organizing Maps

Kaski, S.; Kohonen, T.

1998

Exploratory Data Analysis by the Self-Organizing Map: Structures of Welfare and Poverty in the World

Kaski, S.; Kohonen, T.

1996

Conference proceedings

Interactive Prior Elicitation of Feature Similarities for Small Sample Size Prediction

Afrabandpey, Homayun; Peltola, Tomi; Kaski, Samuel

2017

ISBN: 978-1-4503-4635-1

BCI for physiological text annotation

Barral, Oswald; Kosunen, Ilkka; Ruotsalo, Tuukka; Spapé, Michiel M.; Eugster, Manuel J A; Ravaja, Niklas; Kaski, Samuel; Jacucci, Giulio

2017

ISBN: 978-1-4503-4901-7

Inverse Reinforcement Learning from Summary Data

Kangasrääsiö, Antti; Kaski, Samuel

2017

Modelling Human Decision-making based on Aggregate Observation Data

Kangasrääsiö, Antti; Kaski, Samuel

2017

Inferring Cognitive Models from Data using Approximate Bayesian Computation

Kangasrääsiö, Antti; Athukorala, Kumaripaba; Howes, Andrew; Corander, Jukka; Kaski, Samuel; Oulasvirta, Antti

2017

ISBN: 978-1-4503-4655-9

Interactive Elicitation of Knowledge on Feature Relevance Improves Predictions in Small Data Sets

Micallef, Luana; Sundin, Iiris; Marttinen, Pekka; Ammad-Ud-Din, Muhammad; Peltola, Tomi; Soare, Marta; Jacucci, Giulio; Kaski, Samuel

2017

ISBN: 9781450343480

Non-Stationary Spectral Kernels

Remes, Sami; Heinonen, Markus; Kaski, Samuel

2017

A Mutually-Dependent Hadamard Kernel for Modelling Latent Variable Couplings

Remes, Sami; Heinonen, Markus; Kaski, Samuel

2017

Regression with n → 1 by expert knowledge elicitation

Soare, Marta; Ammad-Ud-din, Muhammad; Kaski, Samuel

2017

ISBN: 9781509061662

Improving drug sensitivity predictions in precision medicine through active expert knowledge elicitation

Sundin, Iiris; Peltola, Tomi; Majumder, Muntasir Mamun; Daee, Pedram; Soare, Marta; Afrabandpey, Homayun; Heckman, Caroline; Kaski, Samuel; Marttinen, Pekka

2017

Convex factorization machine for toxicogenomics prediction

Yamada, Makoto; Lian, Wenzhao; Goyal, Amit; Chen, Jianhui; Wimalawarne, Kishan; Khan, Suleiman A.; Kaski, Samuel; Mamitsuka, Hiroshi; Chang, Yi

2017

ISBN: 9781450348874

Localized Lasso for High-Dimensional Regression

Yamada, Makoto; Koh, Takeuchi; Iwata, Tomoharu; Shawe-Taylor, John; Kaski, Samuel

2017 in Proceedings of Machine Learning Research (PMLR)

ISSN: 1938-7228

Interactive intent modeling from multiple feedback domains

Daee, Pedram; Pyykkö, Joel; Glowacka, Dorota; Kaski, Samuel

2016

ISBN: 9781450341370

A Robust Convex Formulation for Ensemble Clustering

Gao, Junning; Yamada, Makoto; Kaski, Samuel; Mamitsuka, Hiroshi; Zhu, Shanfeng

2016

ISBN: 978-1-57735-770-4

Non-Stationary Gaussian Process Regression with Hamiltonian Monte Carlo

Heinonen, Markus; Mannerström, Henrik; Rousu, Juho; Kaski, Samuel; Lähdesmäki, Harri

2016 in JMLR: Workshop and Conference Proceedings (JMLR)

ISSN: 1938-7228

Interactive modeling of concept drift and errors in relevance feedback

Kangasrääsiö, Antti; Chen, Yi; Głowacka, Dorota; Kaski, Samuel

2016

ISBN: 9781450343701

Bayesian Networks for Variable Groups

Parviainen, Pekka; Kaski, Samuel

2016 in JMLR: Workshop and Conference Proceedings (JMLR)

ISSN: 1938-7228

Preliminary studies on personalized preference prediction from gaze in comparing visualizations

Rezazadegan Tavakoli, Hamed; Poostchimohammadabadi, Hanieh; Peltonen, Jaakko; Laaksonen, Jorma; Kaski, Samuel

2016 in Lecture Notes in Computer Science (SPRINGER)

ISBN: 978-3-319-50831-3

ISSN: 0302-9743

Visualizations relevant to the user by multi-view latent variable factorization

Virtanen, Seppo; Afrabandpey, Homayun; Kaski, Samuel

2016

ISBN: 9781479999880

Exploring peripheral physiology as a predictor of perceived relevance in information retrieval

Barral, Oswald; Eugster, Manuel J.A.; Ruotsalo, Tuukka; Sovijärvi-Spape, Michiel; Kosunen, Ilkka; Ravaja, Niklas; Kaski, Samuel; Jacucci, Giulio

2015

ISBN: 978-1-4503-3306-1

Developing a Symbiotic System for Scientific Information Seeking The Mindsee Project

Gamberini, Luciano; Spagnolli, Anna; Blankertz, Benjamin; Kaski, Samuel; Freeman, Jonathan; Acqualagna, Laura; Barral, Oswald; Bellio, Maura; Chech, Luca; Eugster, Manuel; Ferrari, Eva; Negri, Paolo; Orso, Valeria; Pluchino, Patrik; Minelle, Filippo; Serim, Baris; Wenzel, Markus; Jacucci, Giulio

2015 in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Springer-Verlag)

ISBN: 9783319249162

ISSN: 0302-9743

Improving Controllability and Predictability of Interactive Recommendation Interfaces for Exploratory Search

Kangasrääsiö, Antti; Glowacka, Dorota; Kaski, Samuel

2015

ISBN: 978-1-4503-3306-1

Scinet: Interactive intent modeling for information discovery

Ruotsalo, Tuukka; Peltonen, Jaakko; Eugster, Manuel J A; Glowacka, Dorota; Reijonen, Aki; Jacucci, Giulio; Myllymäki, Petri; Kaski, Samuel

2015

ISBN: 978-1-4503-3621-5

Majorization-Minimization for Manifold Embedding

Yang, Zhirong; Peltonen, Jaakko; Kaski, Samuel

2015

ISSN: 1938-7288

Optimal neighborhood preserving visualization by maximum satisfiability

Bunte, Kerstin; Järvisalo, Matti; Berg, Jeremias; Myllymäki, Petri; Peltonen, Jaakko; Kaski, Samuel

2014

ISBN: 978-1-57735-661-5

Predicting term-relevance from brain signals

Eugster, Manuel J.A.; Ruotsalo, Tuukka; Spapé, Michiel; Kosunen, Ilkka; Barral, Oswald; Ravaja, Niklas; Jacucci, Niklas; Kaski, Samuel

2014

ISBN: 978-1-4503-2257-7

Bayesian Multi-View Tensor Factorization

Khan, Suleiman A.; Kaski, Samuel

2014

ISBN: 978-3-662-44847-2

Retrieval of experiments by efficient comparison of marginal likelihoods

Seth, Sohan; Shawe-Taylor, John; Kaski, Samuel

2014

ISBN: 978-3-319-12639-5

ISSN: 0302-9743

Optimization equivalence of divergences improves neighbor embedding

Yang, Zhirong; Peltonen, Jaakko; Kaski, Samuel

2014

ISSN: 1938-7228

Adaptive timeline interface to personal history data

Ajanki, Antti; Koskela, Markus; Laaksonen, Jorma; Kaski, Samuel

2013

ISBN: 9781450321297

SciNet: A System for Browsing Scientific Literature through Keyword Manipulation

Glowacka, Dorota; Ruotsalo, Tuukka; Konyushkova, Ksenia; Athukorala, Kumaripaba; Kaski, Samuel; Jacucci, Giulio

2013

ISBN: 978-1-4503-1966-9

Directing Exploratory Search: Reinforcement Learning from User Interactions with Keywords

Glowacka, Dorota; Ruotsalo, Tuukka; Konyushkova, Ksenia; Athukorala, Kumaripaba; Kaski, Samuel; Jacucci, Giulio

2013

ISBN: 978-1-4503-1965-2

Kernelized Bayesian Matrix Factorization

Gönen, Mehmet; Khan, Suleiman A.; Kaski, Samuel

2013

Information Retrieval Perspective to Interactive Data Visualization

Peltonen, Jaakko; Sandholm, Max; Kaski, Samuel

2013

ISBN: 978-3-905673-99-9

Supporting Exploratory Search Tasks with Interactive User Modelling

Ruotsalo, Tuukka; Athukorala, Kumaripaba; Glowacka, Dorota; Konyushkova, Ksenia; Oulasvirta, Antti; Kaipiainen, Samuli; Kaski, Samuel; Jacucci, Giulio

2013

ISBN: 0-87715-545-3

Scalable Optimization of Neighbor Embedding for Visualization

Yang, Zhirong; Peltonen, Jaakko; Kaski, Samuel

2013

ISSN: 1938-7228

Sparse Nonparametric Topic Model for Transfer Learning

Faisal, Ali; Gillberg, Leo; Peltonen, Jaakko; Leen, Gayle; Kaski, Samuel

2012

ISBN: 978-2-87419-049-0

Learning Relevance from Natural Eye Movements in Pervasive Interfaces

Kandemir, Melih; Kaski, Samuel

2012

ISBN: 978-1-4503-1467-1

Unsupervised inference of auditory attention from biosensors

Kandemir, Melih; Klami, Arto; Vetek, Akos; Kaski, Samuel

2012

ISBN: 978-3-642-33485-6

ISSN: 0302-9743

Bayesian Group Factor Analysis

Virtanen, Seppo; Klami, Arto; Khan, Suleiman A.; Kaski, Samuel

2012

ISSN: 1532-4435

Probabilistic proactive timeline browser

Ajanki, Antti; Kaski, Samuel

2011

ISSN: 0302-9743

Multitask Learning Using Regularized Multiple Kernel Learning

Gönen, Mehmet; Kandemir, Melih; Kaski, Samuel

2011

ISBN: 978-3-642-24957-0

Focused Multi-task Learning Using Gaussian Processes

Leen, Gayle; Peltonen, Jaakko; Kaski, Samuel

2011

ISSN: 0302-9743

Systematic Use of Computational Methods Allows Stratifying Treatment Responders in Glioblastoma Multiforme

Louhimo, Riku; Aittomäki, Viljami; Faisal, Ali; Laakso, Marko; Chen, Ping; Ovaska, Kristian; Valo, Erkka; Lahti, Leo; Rogojin, Vladimir; Kaski, Samuel; Hautaniemi, Sampsa

2011

Generative Modeling for Maximizing Precision and Recall in Information Visualization

Peltonen, Jaakko; Kaski, Samuel

2011

Cross-species translation of multi-way biomarkers

Suvitaival, Tommi; Huopaniemi, Ilkka; Oresic, Matej; Kaski, Samuel

2011

ISSN: 0302-9743

Bayesian CCA via Group Sparsity

Virtanen, Seppo; Klami, Arto; Kaski, Samuel

2011

ISBN: 978-1-4503-0619-5

Contextual Information Access with Augmented Reality

Ajanki, Antti; Billinghurst, Mark; Järvenpää, Toni; Kandemir, Melih; Kaski, Samuel; Koskela, Markus; Kurimo, Mikko; Laaksonen, Jorma; Puolamäki, Kai; Ruokolainen, Teemu; Tossavainen, Timo

2010

Ubiquitous Contextual Information Access with Proactive Retrieval and Augmentation

Ajanki, Antti; Billinghurst, Mark; Kandemir, Melih; Kaski, Samuel; Koskela, Markus; Kurimo, Mikko; Laaksonen, Jorma; Puolamäki, Kai; Tossavainen, Timo

2010

Pinview: Implicit Feedback in Content-Based Image Retrieval

Auer, Peter; Hussain, Zakria; Kaski, Samuel; Klami, Arto; Kujala, Jussi; Laaksonen, Jorma; Leung, Alex P.; Pasupa, Kitsuchart; Shawe-Taylor, John

2010 in JMLR Workshop and Conference Proceedings (IEEE)

ISSN: 1938-7288

Pinview: Implicit Feedback in Content-Based Image Retrieval

Auer, Peter; Hussain, Zakria; Kaski, Samuel; Klami, Arto; Kujala, Jussi; Laaksonen, Jorma; Leung, Alex P.; Pasupa, Kitsuchart; Shawe-Taylor, John

2010

Hierarchical generative biclustering for microRNA expression analysis

Caldas, José; Kaski, Samuel

2010

Graphical Multi-Way Models

Huopaniemi, Ilkka; Suvitaival, Tommi; Oresic, Matej; Kaski, Samuel

2010

Inferring Object Relevance from Gaze in Dynamic Scenes

Kandemir, Melih; Saarinen, Veli-Matti; Kaski, Samuel

2010

Bayesian exponential family projections for coupled data sources

Klami, Arto; Virtanen, Seppo; Kaski, Samuel

2010

Graph Visualization With Latent Variable Models

Parkkinen, Juuso; Nybo, Kristian; Peltonen, Jaakko; Kaski, Samuel

2010

ISBN: 978-1-4503-0214-2

An information retrieval perspective on visualization of gene expression data with ontological annotation

Peltonen, Jaakko; Aidos, Helena; Gehlenborg, Nils; Brazma, Alvis; Kaski, Samuel

2010

Variational Bayesian mixture of robust CCA models

Viinikanoja, Jaakko; Klami, Arto; Kaski, Samuel

2010

Multi-Way, Multi-View Learning

Huopaniemi, Ilkka; Suvitaival, Tommi; Nikkilä, Janne; Oresic, Matej; Kaski, Samuel

2009

GaZIR: Gaze-based Zooming Interface for Image Retrieval

Kozma, László; Klami, Arto; Kaski, Samuel

2009

Dependency detection with similarity constraints

Lahti, Leo; Myllykangas, Samuel; Knuutila, Sakari; Kaski, Samuel

2009

Automatic Choice of Control Measurements

Leen, Gayle; Hardoon, David R.; Kaski, Samuel

2009

Learning to Rank Images from Eye movements

Pasupa, Kitsuchart; Saunders, Craig; Szedmak, Sandor; Klami, Arto; Kaski, Samuel; Gunn, Steve

2009

Supervised Nonlinear Dimensionality Reduction by Neighbor Retrieval

Peltonen, Jaakko; Aidos, Helena; Kaski, Samuel

2009

Bayesian Solutions to the Label Switching Problem

Puolamäki, Kai; Kaski, Samuel

2009

Two-Way Grouping by One-Way Topic Models

Savia, Eerika; Puolamäki, Kai; Kaski, Samuel

2009

Fast Dependent Components for fMRI Analysis

Savia, Eerika; Klami, Arto; Kaski, Samuel

2009

Using Dependencies to Pair Samples for Multi-View Learning

Tripathi, Abhishek; Klami, Arto; Kaski, Samuel

2009

An Analysis of Generalization Error in Relevant Subtask Learning

Yamazaki, Keisuke; Kaski, Samuel

2009

Bayesian Biclustering with the Plaid Model

Caldas, José; Kaski, Samuel

2008

Variational Bayes Learning from Relevant Tasks Only

Peltonen, Jaakko; Yaslan, Yusuf; Kaski, Samuel

2008

Learning to learn implicit queries from gaze patterns

Puolamäki, Kai; Ajanki, Antti; Kaski, Samuel

2008

Macadamia: Master's Programme in Machine Learning and Data Mining

Raiko, Tapani; Puolamäki, Kai; Karhunen, Juha; Hollmén, Jaakko; Honkela, Antti; Kaski, Samuel; Mannila, Heikki; Oja, Erkki; Simula, Olli

2008

Two-level infinite mixture for multi-domain data

Rogers, Simon; Sinkkonen, Janne; Klami, Arto; Girolami, Mark; Kaski, Samuel

2008

A simple infinite topic mixture for rich graphs and relational data

Sinkkonen, Janne; Parkkinen, Juuso; Aukia, Janne; Kaski, Samuel

2008

Infinite mixtures for multi-relational categorical data

Sinkkonen, Janne; Aukia, Janne; Kaski, Samuel

2008

On asymmetric generalization error of asymmetric multitask learning

Yamazaki, Keisuke; Kaski, Samuel

2008

Discovering condition-dependent Bayesian networks for gene regulation

Ajanki, Antti; Nikkilä, Janne; Kaski, Samuel

2007

ISBN: 1-4244-0999-3

Information Retrieval by Inferring Implicit Queries from Eye Movements

Hardoon, David R.; Shawe-Taylor, John; Ajanki, Antti; Puolamäki, Kai; Kaski, Samuel

2007

Learning from relevant tasks only

Kaski, Samuel; Peltonen, Jaakko

2007

Local Dependent Components

Klami, Arto; Kaski, Samuel

2007

The self-organizing map as a visual neighbor retrieval method

Nybo, Kristian; Venna, Jarkko; Kaski, Samuel

2007

Fast Semi-Supervised Discriminative Component Analysis

Peltonen, Jaakko; Goldberger, Jacob; Kaski, Samuel

2007

ISBN: 1-4244-1566-7

ISSN: 1551-2541

Inferring vertex properties from topology in large networks

Sinkkonen, Janne; Aukia, Janne; Kaski, Samuel

2007

Nonlinear dimensionality reduction as information retrieval

Venna, Jarkko; Kaski, Samuel

2007

Functional Elements and Networks in fMRI

Ylipaavalniemi, J.; Savia, E.; Vigário, R.; Kaski, S.

2007

Implicit feedback from eye movements for proactive information retrieval

Kaski, Samuel

2006

Generative models that discover dependencies between data sets

Klami, Arto; Kaski, Samuel

2006

Exploring the independence of gene regulatory modules

Nikkilä, Janne; Honkela, Antti; Kaski, Samuel

2006

Estimation of human endogenous retrovirus activities from expressed sequence databases

Oja, Merja; Peltonen, Jaakko; Kaski, Samuel

2006

Fast Discriminative Component Analysis for Comparing Examples

Peltonen, Jaakko; Goldberger, Jacob; Kaski, Samuel

2006

Neural Networks and Machine Learning in Bioinformatics - Theory and Applications

Seiffert, Udo; Hammer, Barbara; Kaski, Samuel; Villmann, Thomas

2006

Visualizing Gene Interaction Graphs with Local Multidimensional Scaling

Venna, Jarkko; Kaski, Samuel

2006

Proactive Information Retrieval by Monitoring Eye Movements

Kaski, S.

2005

User models from implicit feedback for proactive information retrieval

Kaski, S.; Myllymäki, P.; Kojo, Ilpo

2005

From Learning Metrics Towards Dependency Exploration

Kaski, S.

2005

Non-Parametric Dependent Components

Klami, A.; Kaski, S.

2005

Integration of Transcription Factor Binding and Gene Expression by Associative Custering

Nikkilä, J.; Roos, C.; Kaski, S.

2005

Combining Eye Movements and Collaborative Filtering for Proactive Information Retrieval

Puolamäki, K.; Salojärvi, J.; Savia, Eerika; Simola, Jaana; Kaski, S.

2005

Expectation Maximization Algorithms for Conditional Likelihoods

Salojärvi, J.; Puolamäki, K.; Kaski, S.

2005

On Discriminative Joint Density Modeling

Salojärvi, J.; Puolamäki, K.; Kaski, S.

2005

Implicit Relevance Feedback From Eye Movements

Salojärvi, J.; Puolamäki, K.; Kaski, S.

2005

Two-Way Latent Grouping Model for User Preference Prediction

Savia, E.; Puolamäki, K.; Sinkkonen, J.; Kaski, S.

2005

Local Multidimensional Scaling with Controlled Tradeoff Between Trustworthiness and Continuity

Venna, J.; Kaski, S.

2005

Visualized Atlas of a Gene Expression Databank

Venna, J.; Kaski, S.

2005

Exploring Dependencies Between Yeast Stress Genes and their Regulators

Nikkilä, J.; Roos, C.; Kaski, S.

2004

Grouping and Visualizing Human Endogenous Retroviruses by Bootstrapping Median Self-organizing Maps

Oja, M.; Sperber, G.; Blomberg, J.; Kaski, S.

2004

Sequential Information Bottleneck for Finite Data

Peltonen, J.; Sinkkonen, J.; Kaski, S.

2004

Relevance Feedback from Eye Movements for Proactive Information Retrieval

Salojärvi, J.; Puolamäki, K.; Kaski, S.

2004

On Text-Based Estimation of Document Relevance

Savia, E.; Kaski, S.; Tuulos, V.; Myllymäki, P.

2004

Associative Clustering

Sinkkonen, J.; Nikkilä, J.; Lahti, L.; Kaski, S.

2004

Discriminative Clustering

Kaski, Samuel

2003

Informative Discriminant Analysis

Kaski, Samuel; Peltonen, J.

2003

Discriminative Clustering: Vector Quantization in Learning Metrics

Kaski, Samuel; Sinkkonen, J.

2003

Regularized Discriminative Clustering

Kaski, Samuel; Sinkkonen, J.; Klami, A.

2003

Clustering of Human Endogenous Retrovirus Sequences with Median Self-Organizing Map

Oja, Merja; Somervuo, P.; Kaski, S.; Kohonen, T.

2003

Learning Metrics for Information Visualization

Peltonen, Jaakko; Klami, A.; Kaski, S.

2003

Discriminative Clustering in Fisher Metrics

Salojärvi, Jarkko; Kaski, S.; Sinkkonen, J.

2003

Can Relevance be Inferred from Eye Movements in Information Retrieval?

Salojärvi, Jarkko; Kojo, I.; Simola, J.; Kaski, S.

2003

Visualizations for Assessing Convergence and Mixing of MCMC

Venna, J.; Kaski, S.; Peltonen, J.

2003

Visualizing High-Dimensional Posterior Distributions in Bayesian Modeling

Venna, Jarkko; Kaski, S.

2003

Learning Metrics

Kaski, Samuel

2002

Accurate Self-Organizing Maps in Learning Metrics

Klami, Arto; Peltonen, J.; Kaski, S.

2002

Learning Metrics for Visualizing Gene Functional Similarities

Oja, Merja; Nikkilä, J.; Törönen, P.; Castrén, E.; Kaski, S.

2002

Learning Metrics for SOM-Based Clustering and Visualization of Yeast Gene Expression Data

Oja, Merja; Törönen, P.; Nikkilä, J.; Castrén, E.; Kaski, S.

2002

Learning More Accurate Metrics for Self-Organizing Maps

Peltonen, Jaakko; Klami, A.; Kaski, S.

2002

Discriminative Clustering of Text Documents

Peltonen, Janne; Sinkkonen, J.; Kaski, S.

2002

Discriminative Clustering: Optimal Contingency Tables by Learning Metrics

Sinkkonen, Janne; Kaski, S.; Nikkilä, J.

2002

Learning Metrics for Self-Organizing Maps

Kaski, Samuel; Sinkkonen, J.; Peltonen, J.

2001

Learning Metrics for Exploratory Data Analysis

Kaski, Samuel

2001

Clustering Gene Expression Data by Mutual Information with Gene Function

Kaski, Samuel; Sinkkonen, J.; Nikkilä, J.

2001

A Topography-Preserving Latent Variable Model with Learning Metrics

Kaski, Samuel; Sinkkonen, J.

2001

SOM-Based Exploratory Analysis of Gene Expression Data

Kaski, Samuel

2001

Analysis and Visualization of Gene Expression Data Using Self-Organizing Maps

Kaski, Samuel; Nikkilä, J.; Törrönen, P.; Castren, E.; Wong, G.

2001

Generative Mixture Modeling by Autonomous Estimators

Kaski, Samuel; Salojärvi, J.

2001

Data Visualization and Analysis with Self-Organizing Maps in Learning Metrics

Kaski, Samuel; Sinkkonen, J.; Peltonen, J.

2001

Methods for Exploratory Cluster Analysis

Kaski, Samuel; Nikkilä, J.; Kohonen, T.

2000

Automatic Content-based Sequential Ordering of Newspaper Articles for Electronic Books

Ollikainen, V.; Bäckström, C.; Kaski, Samuel

2000

Clustering by Similarity in an Auxiliary Space

Sinkkonen, Janne; Kaski, Samuel

2000

Coloring that Reveals Cluster Structures in Multidimensional Data

Venna, Jarkko; Kaski, S.

2000

Coloring that Reveals High-Dimensional Structures in Data

Kaski, S.; Venna, J.; Kohonen, T.

1999

Fast Winner Search for SOM-Based Monitoring and Retrieval of High-Dimensional Data

Kaski, S.

1999

Statistical Aspects of the WEBSOM System in Organizing Document Collections

Kaski, S.; Lagus, K.; Honkela, T.; Kohonen, T.

1998

Dimensionality Reduction by Random Mapping: Fast Similarity Computation for Clustering

Kaski, S.

1998

Methods for Interpreting a Self-Organized Map in Data Analysis

Kaski, S.; Nikkilä, J.; Kohonen, T.

1998

WEBSOM - Self-Organizing Maps of Document Collections

Honkela, T.; Kaski, S.; Lagus, K.; Kohonen, T.

1997

The Adaptive-Subspace Self-Organizing Map (ASSOM)

Kohonen, T.; Kaski, S.; Lappalainen, H.; Salojärvi, J.

1997

Exploration of Full-Text Databases with Self-Organizing Maps

Honkela, T.; Kaski, S.; Lagus, K.; Kohonen, T.

1996

Creating an Order in Digital Libraries with Self-Organizing Maps

Kaski, S.; Honkela, T.; Lagus, K.; Kohonen, T.

1996

Very Large Two-Level SOM for the Browsing of Newsgroups

Kohonen, T.; Kaski, S.; Lagus, K.; Honkela, T.

1996

Self-Organizing Maps of Document Collections: A New Approach to Interactive Exploration

Lagus, K.; Honkela, T.; Kaski, S.; Kohonen, T.

1996

WEBSOM - A Status Report

Lagus, K.; Honkela, T.; Kaski, S.; Kohonen, T.

1996

Visualizing the Clusters on the Self-Organizing Map

Iivarinen, J.; Kohonen, T.; Kangas, J.; Kaski, S.

1994

Non-refereed scientific articles

Unrefereed conference proceedings

User Modelling for Avoiding Overfitting in Interactive Knowledge Elicitation for Prediction

Daee, Pedram; Peltola, Tomi; Vehtari, Aki; Kaski, Samuel

2017

Intentradar: Search User Interface That Anticipates User's Search Intents

Ruotsalo, Tuukka; Peltonen, Jaakko; Eugster, Manuel J.A.; Glowacka, Dorota; Reijonen, Aki; Jacucci, Giulio; Myllymäki, Petri; Kaski, Samuel

2014

ISBN: 978-1-4503-2474-8

Scientific books (monographs)

Book

Kohonen Maps

Oja, E.; Kaski, S.

1999

Book (editor)

Advances in Independent Component Analysis and Learning Machines

Bingham, Ella; Kaski, Samuel; Laaksonen, Jorma; Lampinen, Jouko

2015

ISBN: 9780128028063

Proceedings of the Seventeenth International Conference on Artificial Intelligence and Statistics, JMLR W&CP, Vol. 33

Kaski, Samuel; Corander, Jukka

2014

Neurocomputing, Special Issue on Machine Learning for Signal Processing 2010, 80:1-128

Peltonen, Jaakko; Raiko, Tapani; Kaski, Samuel

2012

ISSN: 0925-2312

Artificial Neural Networks and Machine Learning Research - ICANN 2011, Part II

Honkela, Timo; Duch, Wodzisaw; Girolami, Mark; Kaski, Samuel

2011

ISBN: 978-3-642-21735-7

Artificial Neural Networks and Machine Learning Research - ICANN 2011, Part I

Honkela, Timo; Duch, Wodzisaw; Girolami, Mark; Kaski, Samuel

2011

ISBN: 978-3-642-21737-1

Machine Learning, Special Issue on Learning and Mining with Graphs, 82(2)

Vishwanathan, S.V.N.; Kaski, Samuel; Neville, Jennifer; Wrobel, Stefan

2011

ISSN: 0885-6125

Proceedings of the 2010 IEEE International Workshop on Machine Learning for Signal Processing (MLSP 2010)

Kaski, Samuel; Miller, David J.; Oja, Erkki; Honkela, Antti

2010

Proceedings of the NIPS 2005 Workshop on Machine Learning for Implicit Feedback and User Modeling

Puolamäki, Kai; Kaski, Samuel

2006

ISBN: 951-22-8219-4

Probabilistic Modeling and Machine Learning in Structural and Systems Biology

Rousu, Juho; Kaski, Samuel; Ukkonen, Esko

2006

Proceedings of KRBIO05, Symposium on Knowledge Representation in Bioinformatics, Espoo, Finland, June 15-17, 2005

Bounsaythip, C.; Hollmén, J.; Kaski, S.; Oresic, M.

2005

STeP 2002 - Intelligence, the Art of Natural and Artificial.Proceedings of the 10th Finnish Artificial Intelligence Conference, Oulu, Finland, Sept. 15-17

Ala-Siuru, P.; Kaski, Samuel

2002

Neljännesvuosisata Hatutusta: Hahmontunnistustutkimus Suomessa 1977-2002

Iivarinen, Jukka; Kaski, S.; Oja, E.

2002

Publications intended for professional communities

Article in professional journal

Ydintehtävät kunniaan

Kaski, Samuel

2006 in Polysteekki (Suomen hahmontunnistustutkimuksen seura ry)

ISSN: 1455-9595

Self-Organizing Maps of Document Collections

Honkela, T.; Kaski, S.; Lagus, K.; Kohonen, T.

1996 in Polysteekki (Suomen hahmontunnistustutkimuksen seura ry)

Article in professional conference proceedings

Classification of weak multi-view signals by sharing factors in a mixture of Bayesian group factor analyzers

Remes, Sami; Mononen, Tommi; Kaski, Samuel

2016

Toward computational cumulative biology by combining models of biological datasets

Peltonen, Jaakko; Faisal, Ali; Georgii, Elisabeth; Rung, Johan; Kaski, Samuel

2014

Bayesian Optimization in Interactive Scientific Search

Ruotsalo, Tuukka; Peltonen, Jaakko; Eugster, Manuel J.A.; Glowacka, Dorota; Konyushkova, Ksenia; Athukorala, Kumaripaba; Kosunen, Ilkka; Reijonen, Aki; Myllymäki, Petri; Jacucci, Giulio; Kaski, Samuel

2014

Published development or research report

Bayesian inference in hierarchical models by combining independent posteriors

Dutta, Ritabrata; Blomstedt, Paul; Kaski, Samuel

2017

Likelihood-free inference by penalised logistic regression

Dutta, Ritabrata; Corander, Jukka; Kaski, Samuel; Gutmann, Michael

2017

Differentially Private Bayesian Learning on Distributed Data

Heikkilä, Mikko; Lagerspetz, Eemil; Kaski, Samuel; Shimizu, Kana; Tarkoma, Sasu; Honkela, Antti

2017

Efficient differentially private learning improves drug sensitivity prediction

Honkela, Antti; Das, Mrinal; Nieminen, Arttu; Dikmen, Onur; Kaski, Samuel

2017

Distributed Bayesian Matrix Factorization with Minimal Communication

Qin, Xiangju; Blomstedt, Paul; Leppäaho, Eemeli; Parviainen, Pekka; Kaski, Samuel

2017

Dealing with Concept Drift in Exploratory Search: An Interactive Bayesian Approach

Kangasrääsiö, Antti; Chen, Yi; Glowacka, Dorota; Kaski, Samuel

2016

Improving controllability and predictability of an interactive user model driven search interface

Kangasrääsiö, Antti; Glowacka, Dorota; Kaski, Samuel

2014

Interactive Visualization of Search Intent for Exploratory Information Retrieval

Kangasrääsiö, Antti; Glowacka, Dorota; Ruotsalo, Tuukka; Peltonen, Jaakko; Eugster, Manuel; Konyushkova, Ksenia; Athukorala, Kumaripaba; Kosunen, Ilkka; Reijonen, Aki; Myllymäki, Petri; Jacucci, Giulio; Kaski, Samuel

2014

Generative Modeling for Maximizing Precision and Recall in Information Visualization

Peltonen, Jaakko; Kaski, Samuel

2010

Ubiquitous Contextual Information Access with Proactive Retrieval and Augmentation

Ajanki, Antti; Billinghurst, Mark; Kandemir, Melih; Kaski, Samuel; Koskela, Markus; Kurimo, Mikko; Laaksonen, Jorma; Puolamäki, Kai; Tossavainen, Timo

2009

Graph Visualization With Latent Variable Models

Nybo, Kristian; Parkkinen, Juuso; Kaski, Samuel

2009

A Block Model Suitable for Sparse Graphs

Parkkinen, Juuso; Sinkkonen, Janne; Gyenge, Adam; Kaski, Samuel

2009

On Two-Way Grouping by One-Way Topic Models

Savia, Eerika; Puolamäki, Kai; Kaski, Samuel

2009

Bayesian Solutions to the Label Switching Problem

Puolamäki, Kai; Kaski, Samuel

2008

Using Dependencies to Pair Samples for Multi-View Learning

Tripathi, Abhishek; Klami, Arto; Kaski, Samuel

2008

Generative Models That Discover Dependencies between Data Sets

Klami, Arto; Kaski, Samuel

2006

Learning when only some of the training data are from the same distribution as test data

Peltonen, Jaakko; Kaski, Samuel

2006

Discriminative MCMC

Puolamäki, Kai; Salojärvi, Jarkko; Savia, Eerika; Kaski, Samuel

2006

Nonlinear Dimensionality Reduction as Information Retrieval

Venna, Jarkko; Kaski, Samuel

2006

Functional Elements and Networks in fMRI

Ylipaavalniemi, Jarkko; Savia, Eerika; Vigário, Ricardo; Kaski, Samuel

2006

User models from implicit feedback for proactive information retrieval

Kaski, Samuel; Myllymäki, Petri; Kojo, Ilpo

2005

Inferring Relevance from Eye Movements: Feature Extraction

Salojärvi, Jarkko; Puolamäki, Kai; Simola, Jaana; Kovanen, L.; Kojo, Ilpo; Kaski, Samuel

2005

Expectation Maximization Algorithms for Conditional Likelihoods

Salojärvi, J.; Puolamäki, K.; Kaski, S.

2005

Associative Clustering (AC): Technical Details

Sinkkonen, J.; Kaski, S.; Nikkilä, L.; Lahti, L.

2005

Two-Way Latent Grouping Model for User Preference Prediction

Puolamäki, K.; Savia, E.; Sinkkonen, J.; Kaski, S.

2004

Associative Clustering to Find Dependencies Between Expression Profiles and Transcription Factor Binding

Nikkilä, Janne; Roos, C.; Sinkkonen, Janne; Kaski, S.

2003

Finite Sequential Information Bottleneck (fsIB)

Peltonen, Jaakko; Sinkkonen, J.; Kaski, S.

2003

Relevance Feedback from Eye Movements for Proactive Information Retrieval

Salojärvi, Jarkko; Puolamäki, K.; Kaski, S.

2003

Associative Clustering by Maximizing a Bayes Factor

Sinkkonen, J.; Nikkilä, J.; Lahti, L.; Kaski, S.

2003

Regularized Discriminative Clustering

Kaski, Samuel; Sinkkonen, J.; Klami, A.

2002

Analysis of Gene Expression Data Using Semi-Supervised Clustering

Nikkilä, Janne; Törönen, P.; Sinkkonen, J.; Kaski, S.

2001

Neighborhood Preservation in Nonlinear Projection Methods: An Experimental Study

Venna, Jarkko; Kaski, Samuel

2001

Metrics That Learn Relevance

Kaski, Samuel; Sinkkonen, J.

2000

Convergence of a Stochastic Semisupervised Clustering Algorithm

Kaski, Samuel

2000

Semisupervised Clustering Based on Conditional Distributions in an Auxiliary Space

Sinkkonen, Janne; Kaski, S.

2000

Metrics Induced by Maximizing Mutual Information

Kaski, S.; Sinkkonen, J.

1999

Keyword Selection Method for Characterizing Text Document Maps

Lagus, K.; Kaski, S.

1999

3043 Works that Have Been Based on the Self-Organizing Map (SOM) Method Developed by Kohonen

Kangas, J.; Kaski, S.

1998

Automatic Coloring of Data According to Its Cluster Structure

Kohonen, Teuvo; Kaski, S.; Venna, J.

1997

Topographic Components Model with Adaptive Latencies

Sinkkonen, J.; Kaski, S.

1997

Newsgroup Exploration with WEBSOM Method and Browsing Interface

Honkela, T.; Kaski, S.; Lagus, K.; Kohonen, T.

1996

Compression of Vector Quantization Code Sequences Based on Code Frequencies and Spatial Redundancies

Kangas, J.; Kaski, S.

1996

Comparing Self-Organizing Maps

Kaski, S.; Lagus, K.

1996

Computationally Efficient Approximation of a Probabilistic Model for Document Representation in the WEBSOM Full-Text Analysis Method

Kaski, S.

1996

Browsing Digital Libraries with the Aid of Self-Organizing Maps

Lagus, K.; Kaski, S.; Honkela, T.; Kohonen, T.

1996

Structures of Welfare and Poverty in the World Discovered by the Self-Organizing Map

Kaski, S.; Kohonen, T.

1995

Monitoring EEG Signal with the Self-Organizing Map

Kaski, S.; Joutsiniemi, S.

1993

Analysis of magnetoencephalographic data with self-organizing maps

Portin, K.; Salmelin, R.; Kaski, S.

1993

Patents and invention disclosures

Patent

Generating data to improve protein stability prediction

Heinonen, Markus; Jokinen, Emmi; Kaski, Samuel; Rousu, Juho; Lähdesmäki, Harri

2016

Probabilistic Expert Knowledge Elicitation of Feature Relevances in Sparse Linear Regression

Daee, Pedram; Peltola, Tomi; Soare, Marta; Kaski, Samuel

2016 in CEUR Workshop Proceedings (CEUR)

ISSN: 1613-0073

ELFI: Engine for Likelihood-Free Inference

Kangasrääsiö, Antti; Lintusaari, Jarno; Skyten, Kusti; Järvenpää, Marko; Vuollekoski, Henri; Gutmann, Michael; Vehtari, Aki; Corander, Jukka; Kaski, Samuel

2016

Personalization of Search Results using Interactive Intent Modeling

Kangasrääsiö, Antti; Głowacka, Dorota; Kaski, Samuel

2016

Interactive user intent modeling for eliciting priors of a normal linear model

Sundin, Iiris; Micallef, Luana; Marttinen, Pekka; Ammad-Ud-Din, Muhammad; Peltola, Tomi; Soare, Marta; Jacucci, Giulio; Kaski, Samuel

2016